Jmol is a free, open source molecule viewer for students, educators, and researchers in For the most up-to-date scripting documentation see the Jmol/ JSmol. Documentation of Jmol’s scripting language can be found here: http://chemapps. This is the official. JSmol is a fully functional implementation of Jmol that does not Various ways to create surfaces and more documentation on surfaces.

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In general, the first of these methods is only acceptable for short scripts. Running Jmol using Java Web Start. That is, objects further away are smaller. What Jmol can do Samples Check out the Screenshot Gallery still images to see samples of documenntation can be done with Jmol and jmo, Demonstration pages especially jsmol. The underlying technology that supports this is known as LiveConnect. In addition, the Jmol rendering engine does not currently handle intersecting spheres.

It has all the capabilities of the JSmol applet but runs approximately times faster. Retrieved from ” http: Learn by example You vocumentation also learn by examining web pages that use Jmol: By default, atoms are rendered with perspective depth.


Jmol Documentation

Installing and Enabling Java Proteopedia wiki. Various ways of invoking scripts are demonstrated. In addition, it can be run in “headless” mode JmolData.

Various ways to create surfaces and more documentation on surfaces. But content there is currently quite outdated. How to install the application on a web server to be delivered using Java Web Start. More dynamical and frequently updated than this web site! Jmol in an Android tablet. documentatkon

A short script included as an applet parameter which is executed as soon as the applet is loaded. For more information, please visit the Project pages section.

Jmol Wiki – Main Page

Documentation for Surfaces This documentation describes and compares the different options available in Jmol scripts for generating surfaces, either based on the molecule or geometric.

So if you make the atom sizes large you will get disappointing results. To get things to run on an installed documnetation of older Netscape and IE browsers j,ol may want to consider looking for ‘old’ documentation rather than ‘up to date’ documentation. Includes atomic, van der Waals and ionic radii.

The Jmol application is a stand-alone Java application Jmol. Using JavaScript commands embedded in web pages, you can control the jol of the Jmol applet. Main Page From Jmol. If you want to participate, you must become a user in the Wiki. Jmol is fully scriptable. The recommended way to cite Jmol is: Controls whether or not rotations should be performed with wireframe rendering.


You can change to another language if desired. Personal tools Log in. There you can share ideas and experiences, ask for help, give us feedback, request new features or changes, discuss implementation, submit patches, or contribute code.

Backward compatibility changes of behavior across versions Features added since version 10 Users mailing list and a mirror. To embed the Jmol Applet in a web page, you need only one java archive file, JmolApplet. The Jmol application is a standalone Java application that runs on the desktop.

This is an compilation problem.